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1

Molecular Phylogeny of Labyrinthulids and Thraustochytrids Based On the Sequencing of 18s Ribosomal Rna Gene

DAISKE HONDA, TOSHIHIRO YOKOCHI, TORO NAKAHARA, SESHAGIRI RAGHUKUMAR, AKIRA NAKAGIRI, KARSTEN SCHAUMANN, TAKANORI HIGASHIHARA

Journal:

Journal of Eukaryotic Microbiology

Year:

1999

Language:

english

File:

PDF, 1006 KB

english, 1999

2

Taxonomic rearrangement of the genusUlkeniasensu lato based on morphology, chemotaxonomical characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation forUlkeniaand erection ofBotryochytrium,Parietichytrium, andSicyoidochytriumgen. nov.

Rinka Yokoyama, Baharuddin Salleh, Daiske Honda

Journal:

Year:

2007

Language:

english

File:

PDF, 859 KB

english, 2007

3

Schizochytrium limacinum sp. nov., a new thraustochytrid from a mangrove area in the west Pacific Ocean

Daiske Honda, Toshihiro Yokochi, Toro Nakahara, Mayumi Erata, Takanori Higashihara

Journal:

Mycological Research

Year:

1998

Language:

english

File:

PDF, 810 KB

english, 1998

4

Bothrosome Formation in Schizochytrium aggregatum (Labyrinthulomycetes, Stramenopiles) during Zoospore Settlement

Iwata, Izumi, Kimura, Kei, Tomaru, Yuji, Motomura, Taizo, Koike, Kanae, Koike, Kazuhiko, Honda, Daiske

Journal:

Year:

2017

Language:

english

File:

PDF, 2.63 MB

english, 2017

5

Optimization of culture conditions of the thraustochytrid Aurantiochytrium sp. strain 18W-13a for squalene production

Atsushi Nakazawa, Hiroshi Matsuura, Ryoji Kose, Syou Kato, Daiske Honda, Isao Inouye, Kunimitsu Kaya, Makoto M. Watanabe

Journal:

Bioresource Technology

Year:

2012

Language:

english

File:

PDF, 569 KB

english, 2012

6

Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem

Hamamoto, Yoko, Honda, Daiske, Ianora, Adrianna

Journal:

Year:

2019

Language:

english

File:

PDF, 3.82 MB

english, 2019

7

The Distribution of Extracellular Cellulase Activity in Marine Eukaryotes, Thraustochytrids

Naoki Nagano, Shou Matsui, Tomoyo Kuramura, Yousuke Taoka, Daiske Honda, Masahiro Hayashi

Journal:

Marine Biotechnology

Year:

2011

Language:

english

File:

PDF, 91 KB

english, 2011

8

Optimization of Biomass and Fatty Acid Production by Aurantiochytrium sp. Strain 4W-1b

Atsushi Nakazawa, Hiroshi Matsuura, Ryoji Kose, Kumpei Ito, Mayumi Ueda, Daiske Honda, Isao Inouye, Kunimitsu Kaya, Makoto M. Watanabe

Journal:

Procedia Environmental Sciences

Year:

2012

Language:

english

File:

PDF, 169 KB

english, 2012

9

Nutritional Intake by Ectoplasmic Nets of Schizochytrium aggregatum (Labyrinthulomycetes, Stramenopiles)

Iwata, Izumi, Honda, Daiske

Journal:

Year:

2018

Language:

english

File:

PDF, 13.21 MB

english, 2018

10

Possible aplanochytrid (Labyrinthulea) prey detected using 18S metagenetic diet analysis in the key copepod species Calanus sinicus in the coastal waters of the subtropical western North Pacific

Hirai, Junya, Hamamoto, Yoko, Honda, Daiske, Hidaka, Kiyotaka

Journal:

Plankton and Benthos Research

Year:

2018

Language:

english

File:

PDF, 601 KB

english, 2018

11

Biodiversity of Unculturable Soil Microorganisms.

OYAIZU, Hiroshi, KIMU, Hongik, HONDA, Daiske

Journal:

Journal of the agricultural chemical society of Japan

Year:

1999

File:

PDF, 995 KB

1999

12

Detection of Seven Major Evolutionary Lineages in Cyanobacteria Based on the 16S rRNA Gene Sequence Analysis with New Sequences of Five MarineSynechococcusStrains

Daiske Honda, Akira Yokota, Junta Sugiyama

Journal:

Journal of Molecular Evolution

Year:

1999

Language:

english

File:

PDF, 1.16 MB

english, 1999

13

Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar raphidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics

Shoko Hosoi-Tanabe, Daiske Honda, Sachiko Fukaya, Isamu Otake, Yuji Inagaki, Yoshihiko Sako

Journal:

Phycological Research

Year:

2007

Language:

english

File:

PDF, 467 KB

english, 2007

14

The Development, Ultrastructural Cytology, and Molecular Phylogeny of the Basal Oomycete Eurychasma dicksonii, Infecting the Filamentous Phaeophyte Algae Ectocarpus siliculosus and Pylaiella littoralis

Satoshi Sekimoto, Gordon W. Beakes, Claire M.M. Gachon, Dieter G. Müller, Frithjof C. Küpper, Daiske Honda

Journal:

Year:

2008

Language:

english

File:

PDF, 3.34 MB

english, 2008

15

Effect of trace elements on growth of marine eukaryotes, tharaustochytrids

Nagano, Naoki, Taoka, Yousuke, Honda, Daiske, Hayashi, Masahiro

Journal:

Journal of Bioscience and Bioengineering

Year:

2013

Language:

english

File:

PDF, 279 KB

english, 2013

16

Molecular phylogeny of an unidentifiedHaliphthoros-like marine oomycete andHaliphthoros milfordensisinferred from nuclear-encoded small- and large-subunit rRNA genes and mitochondrial-encoded cox2 gene

Satoshi Sekimoto, Kishio Hatai, Daiske Honda

Journal:

Year:

2007

Language:

english

File:

PDF, 328 KB

english, 2007

17

Novel Lysophospholipid Acyltransferase PLAT1 of Aurantiochytrium limacinum F26-b Responsible for Generation of Palmitate-Docosahexaenoate-Phosphatidylcholine and Phosphatidylethanolamine

Abe, Eriko, Ikeda, Kazutaka, Nutahara, Eri, Hayashi, Masahiro, Yamashita, Atsushi, Taguchi, Ryo, Doi, Kosaku, Honda, Daiske, Okino, Nozomu, Ito, Makoto, Schunck, Wolf-Hagen

Journal:

Year:

2014

Language:

english

File:

PDF, 2.04 MB

english, 2014

18

Taxonomy, molecular phylogeny, and ultrastructural morphology of Olpidiopsis porphyrae sp. nov. (Oomycetes, straminipiles), a unicellular obligate endoparasite of Bangia and Porphyra spp. (Bangiales, Rhodophyta)

Satoshi Sekimoto, Kazunari Yokoo, Yoshio Kawamura, Daiske Honda

Journal:

Mycological Research

Year:

2008

Language:

english

File:

PDF, 2.49 MB

english, 2008

19

Elemental composition and ultrafine structure of the skeleton in shell-bearing protists—a case study of phaeodarians and radiolarians

Nakamura, Yasuhide, Iwata, Izumi, Hori, Rie S., Uchiyama, Naomi, Tuji, Akihiro, Fujita, Masaki J., Honda, Daiske, Ohfuji, Hiroaki

Journal:

Journal of Structural Biology

Year:

2018

Language:

english

File:

PDF, 4.20 MB

english, 2018

20

Detection of Genes Involved in Fatty Acid Elongation and Desaturation in Thraustochytrid Marine Eukaryotes

Nagano, Naoki, Sakaguchi, Keishi, Taoka, Yousuke, Okita, Yuji, Honda, Daiske, Ito, Makoto, Hayashi, Masahiro

Journal:

Journal of Oleo Science

Year:

2011

Language:

english

File:

PDF, 904 KB

english, 2011

21

10.2331/suisan.75.907

HONDA, DAISKE, KAWAMURA, YOSHIO, ARUGA, YUSHO

Journal:

NIPPON SUISAN GAKKAISHI

Year:

2009

File:

PDF, 126 KB

2009

22

Fluorescence in situ hybridization using 18S rRNA-targeted probe for specific detection of thraustochytrids (Labyrinthulomycetes)

TAKAO, YOSHITAKE, TOMARU, YUJI, NAGASAKI, KEIZO, SASAKURA, YUKARI, YOKOYAMA, RINKA, HONDA, DAISKE

Journal:

Plankton and Benthos Research

Year:

2007

File:

PDF, 225 KB

2007

23

Isolation and Characterization of a Δ5-Desaturase from Oblongichytrium sp.

KUMON, Yasuyuki, KAMISAKA, Yasushi, TOMITA, Nao, KIMURA, Kazuyoshi, UEMURA, Hiroshi, YOKOCHI, Toshihiro, YOKOYAMA, Rinka, HONDA, Daiske

Journal:

Bioscience Biotechnology and Biochemistry

Year:

2008

Language:

english

File:

PDF, 364 KB

english, 2008

24

Taxonomy of Olpidiopsis porphyrae sp. nov. and development of detection method of O. porphyrae in the nori cultivation ground

Journal:

NIPPON SUISAN GAKKAISHI

Year:

2009

File:

PDF, 308 KB

2009

25

Proposal of M onorhizochytrium globosum gen. nov., comb. nov. (Stramenopiles, Labyrinthulomycetes) for former T hraustochytrium globosum based on morphological features and phylogenetic relationships

Doi, Kosaku, Honda, Daiske

Journal:

Phycological Research

Year:

2017

Language:

english

File:

PDF, 1.82 MB

english, 2017

26

Correction: Novel Lysophospholipid Acyltransferase PLAT1 of Aurantiochytrium limacinum F26-b Responsible for Generation of Palmitate-Docosahexaenoate-Phosphatidylcholine and Phosphatidylethanolamine

Abe, Eriko, Ikeda, Kazutaka, Nutahara, Eri, Hayashi, Masahiro, Yamashita, Atsushi, Taguchi, Ryo, Doi, Kosaku, Honda, Daiske, Okino, Nozomu, Ito, Makoto

Journal:

Year:

2018

Language:

english

File:

PDF, 1.86 MB

english, 2018

27

Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem

Hamamoto, Yoko, Honda, Daiske, Ianora, Adrianna

Journal:

Year:

2019

File:

PDF, 3.82 MB

2019

28

Grouping Newly Isolated Docosahexaenoic Acid-Producing Thraustochytrids Based on Their Polyunsaturated Fatty Acid Profiles and Comparative Analysis of 18S rRNA Genes

Jianzhong Huang, Tsunehiro Aki, Toshihiro Yokochi, Toro Nakahara, Daiske Honda, Seiji Kawamoto, Seiko Shigeta, Kazuhisa Ono, Osamu Suzuki

Journal:

Marine Biotechnology

Year:

2003

Language:

english

File:

PDF, 179 KB

english, 2003

29

Taxonomic rearrangement of the genusSchizochytriumsensu lato based on morphology, chemotaxonomic characteristics, and 18S rRNA gene phylogeny (Thraustochytriaceae, Labyrinthulomycetes): emendation forSchizochytriumand erection ofAurantiochytriumandOblongichytriumgen. nov.

Rinka Yokoyama, Daiske Honda

Journal:

Year:

2007

Language:

english

File:

PDF, 627 KB

english, 2007

30

Ultrastructure and reconstruction of the flagellar apparatus architecture in Ankylochrysis lutea (Chrysophyceae, Sarcinochrysidales)

Honda, Daiske, Inouye, Isao

Journal:

Year:

1995

Language:

english

File:

PDF, 1.09 MB

english, 1995

31

Homologs of the Sexually Induced Gene 1 (sig1) Product constitute the Stramenopile Mastigonemes

Daiske Honda, Takanori Shono, Kei Kimura, Satoshi Fujita, Mineo Iseki, Yumiko Makino, Akio Murakami

Journal:

Year:

2007

Language:

english

File:

PDF, 1.47 MB

english, 2007

32

Ultrastructure and taxonomy of a marine photosynthetic stramenopile Phaeomonas parva gen. et sp. nov. (Pinguiophyceae) with emphasis on the flagellar apparatus architecture

DAISKE HONDA, ISAO INOUYE

Journal:

Phycological Research

Year:

2002

Language:

english

File:

PDF, 4.56 MB

english, 2002

33

Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding

Clement K.M. Tsui, Wyth Marshall, Rinka Yokoyama, Daiske Honda, J. Casey Lippmeier, Kelly D. Craven, Paul D. Peterson, Mary L. Berbee

Journal:

Molecular Phylogenetics and Evolution

Year:

2009

Language:

english

File:

PDF, 641 KB

english, 2009

34

Olpidiopsis bostrychiae sp. nov.: an endoparasitic oomycete that infects Bostrychia and other red algae (Rhodophyta)

Sekimoto, Satoshi, Klochkova, Tatyana A., West, John A., Beakes, Gordon W., Honda, Daiske

Journal:

Year:

2009

Language:

english

File:

PDF, 2.74 MB

english, 2009

35

The Pinguiophyceae classis nova, a new class of photosynthetic stramenopiles whose members produce large amounts of omega-3 fatty acids

Masanobu Kawachi, Isao Inouye, Daiske Honda, Charles J. O'Kelly, J. Craig Bailey, Robert R. Bidigare, Robert A. Andersen

Journal:

Phycological Research

Year:

2002

Language:

english

File:

PDF, 1.15 MB

english, 2002

36

Sulcochrysis biplastida gen. et sp. nov.: Cell structure and absolute configuration of the flagellar apparatus of an enigmatic chromophyte alga

Daiske Honda, Masanobu Kawachi, Isao Inouye

Journal:

Phycological Research

Year:

1995

File:

PDF, 2.30 MB

1995

37

On the Bio-Rearrangement into Fully Saturated Fatty Acids-Containing Triglyceride in Aurantiochytrium sp

Hiroshi Matsuura, Atsushi Nakazawa, Mayumi Ueda, Daiske Honda, Makoto M. Watanabe, Kunimitsu Kaya

Journal:

Procedia Environmental Sciences

Year:

2012

Language:

english

File:

PDF, 144 KB

english, 2012

38

TLC screening of thraustochytrid strains for squalene production

Nakazawa, Atsushi, Kokubun, Yume, Matsuura, Hiroshi, Yonezawa, Natsuki, Kose, Ryoji, Yoshida, Masaki, Tanabe, Yuuhiko, Kusuda, Emi, Thang, Duong, Ueda, Mayumi, Honda, Daiske, Mahakhant, Aparat, Kaya,

Journal:

Journal of Applied Phycology

Year:

2014

Language:

english

File:

PDF, 1.85 MB

english, 2014

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